Tool to retrieve a set of sequences from a given sequence set based on a list of sequence IDs or names.
For example if you have following sequence set in Chipster:
>CAA54483.1 CAA54483.1 Bet v 1 e [Betula pendula] MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFP EGIPFKYVKGRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNK YHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN >CAA54482.1 CAA54482.1 Bet v 1 d [Betula pendula] MGVFNYEIETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKINFP EGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNK YHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN >CAA54481.1 CAA54481.1 Bet v 1 c [Betula pendula] MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFP EGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNK YHTKGDQEMKAEHMKAIKEKGEALLRAVESYLLAHSDAYN >CAA54485.1 CAA54485.1 Bet v 1 g [Betula pendula] MGVFNYESETTSVIPAARLFKAFILEGDNLIPKVAPQAISSVENIEGNGGPGTIKKINFP EGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNK YHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN >CAA54421.1 CAA54421.1 Bet v 1b [Betula pendula] MGVFNYETETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFP EGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNK YHTKGDHEMKAEHMKAIKEKGEALLRAVESYLLAHSDAYN
Then you could pick the last three sequences from this set with a file containing the following name list:
CAA54481.1 CAA54485.1 v1g CAA54421.1 v1bNote that in the name list, only the first word of each row is picked and used as a name of a sequence to be picked. Thus the rest of the line can contain comments or other data.
Also a table, where the first column contains the sequence name or ID, can be used as a name list.
The format of the resulting output sequence file is the same as the format of the input sequence file.