MAST - Motif Alignment and Search Tool
MAST version 4.0.0 (Release date: 2008-06-27 09:26:47 +1000 (Fri, 27 Jun 2008))
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ../../../tests/adh.s (peptide)
Last updated on Thu Jul 17 14:11:37 2008
Database contains 33 sequences, 9996 residues
MOTIFS ../../../tests/meme/meme.adh.zoops (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 21 GKVVLITGCSSGIGKATAKHL
2 29 SVYCASKFAVRMLTRSMAMEYAPHGIRVN
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1
----- -----
2 0.30
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 33 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
Links | Sequence Name | Description | E-value | Length
|
---|
| BUDC_KLETE
| ACETOIN(DIACETYL) REDUCTA...
| 1.3e-32
| 241
|
| YRTP_BACSU
| HYPOTHETICAL 25.3 KD PROT...
| 1.4e-32
| 238
|
| FIXR_BRAJA
| FIXR PROTEIN
| 3.5e-28
| 278
|
| AP27_MOUSE
| ADIPOCYTE P27 PROTEIN (AP...
| 1.1e-26
| 244
|
| HDHA_ECOLI
| 7-ALPHA-HYDROXYSTEROID DE...
| 1.6e-26
| 255
|
| DHGB_BACME
| GLUCOSE 1-DEHYDROGENASE B...
| 4.8e-26
| 262
|
| HDE_CANTR
| HYDRATASE-DEHYDROGENASE-E...
| 2.3e-25
| 906
|
| DHII_HUMAN
| CORTICOSTEROID 11-BETA-DE...
| 2.3e-25
| 292
|
| NODG_RHIME
| NODULATION PROTEIN G (HOS...
| 2.7e-25
| 245
|
| YINL_LISMO
| HYPOTHETICAL 26.8 KD PROT...
| 2.9e-25
| 248
|
| DHB2_HUMAN
| no comment
| 3.1e-25
| 387
|
| RIDH_KLEAE
| RIBITOL 2-DEHYDROGENASE (...
| 8.7e-25
| 249
|
| DHMA_FLAS1
| N-ACYLMANNOSAMINE 1-DEHYD...
| 1.3e-24
| 270
|
| FVT1_HUMAN
| no comment
| 2.1e-24
| 332
|
| ENTA_ECOLI
| 2,3-DIHYDRO-2,3-DIHYDROXY...
| 6.7e-24
| 248
|
| 2BHD_STREX
| 20-BETA-HYDROXYSTEROID DE...
| 1.5e-23
| 255
|
| BDH_HUMAN
| D-BETA-HYDROXYBUTYRATE DE...
| 2.4e-23
| 343
|
| HMTR_LEIMA
| no comment
| 4.4e-23
| 287
|
| DHES_HUMAN
| ESTRADIOL 17 BETA-DEHYDRO...
| 2e-22
| 327
|
| 3BHD_COMTE
| 3-BETA-HYDROXYSTEROID DEH...
| 5.3e-22
| 253
|
| BA72_EUBSP
| 7-ALPHA-HYDROXYSTEROID DE...
| 5.5e-22
| 249
|
| GUTD_ECOLI
| SORBITOL-6-PHOSPHATE 2-DE...
| 3e-21
| 259
|
| DHB3_HUMAN
| no comment
| 3.9e-21
| 310
|
| BPHB_PSEPS
| BIPHENYL-CIS-DIOL DEHYDRO...
| 5.4e-19
| 275
|
| LIGD_PSEPA
| C ALPHA-DEHYDROGENASE (EC...
| 6.7e-19
| 305
|
| RFBB_NEIGO
| no comment
| 6.9e-19
| 346
|
| DHCA_HUMAN
| no comment
| 1.5e-17
| 276
|
| ADH_DROME
| ALCOHOL DEHYDROGENASE (EC...
| 1.5e-14
| 255
|
| FABI_ECOLI
| no comment
| 5.3e-14
| 262
|
| YURA_MYXXA
| no comment
| 7.1e-13
| 258
|
| PCR_PEA
| no comment
| 8.2e-11
| 399
|
| MAS1_AGRRA
| no comment
| 2.7e-09
| 476
|
| CSGA_MYXXA
| no comment
| 4.5e-08
| 166
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
Links | Name | Expect | Motifs
|
---|
| BUDC_KLETE
| 1.3e-32
|
|
| YRTP_BACSU
| 1.4e-32
|
|
| FIXR_BRAJA
| 3.5e-28
|
|
| AP27_MOUSE
| 1.1e-26
|
|
| HDHA_ECOLI
| 1.6e-26
|
|
| DHGB_BACME
| 4.8e-26
|
|
| HDE_CANTR
| 2.3e-25
|
|
| DHII_HUMAN
| 2.3e-25
|
|
| NODG_RHIME
| 2.7e-25
|
|
| YINL_LISMO
| 2.9e-25
|
|
| DHB2_HUMAN
| 3.1e-25
|
|
| RIDH_KLEAE
| 8.7e-25
|
|
| DHMA_FLAS1
| 1.3e-24
|
|
| FVT1_HUMAN
| 2.1e-24
|
|
| ENTA_ECOLI
| 6.7e-24
|
|
| 2BHD_STREX
| 1.5e-23
|
|
| BDH_HUMAN
| 2.4e-23
|
|
| HMTR_LEIMA
| 4.4e-23
|
|
| DHES_HUMAN
| 2e-22
|
|
| 3BHD_COMTE
| 5.3e-22
|
|
| BA72_EUBSP
| 5.5e-22
|
|
| GUTD_ECOLI
| 3e-21
|
|
| DHB3_HUMAN
| 3.9e-21
|
|
| BPHB_PSEPS
| 5.4e-19
|
|
| LIGD_PSEPA
| 6.7e-19
|
|
| RFBB_NEIGO
| 6.9e-19
|
|
| DHCA_HUMAN
| 1.5e-17
|
|
| ADH_DROME
| 1.5e-14
|
|
| FABI_ECOLI
| 5.3e-14
|
|
| YURA_MYXXA
| 7.1e-13
|
|
| PCR_PEA
| 8.2e-11
|
|
| MAS1_AGRRA
| 2.7e-09
|
|
| CSGA_MYXXA
| 4.5e-08
|
|
SCALE
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
1 |
25 |
50 |
75 |
100 |
125 |
150 |
175 |
200 |
225 |
250 |
275 |
300 |
325 |
350 |
375 |
400 |
425 |
450 |
475 |
500 |
525 |
550 |
575 |
600 |
625 |
650 |
675 |
700 |
725 |
750 |
775 |
800 |
825 |
850 |
875 |
|
---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
BUDC_KLETE
ACETOIN(DIACETYL) REDUCTASE (EC 1.1.1.5) (ACETOIN DEHYDROGENASE)
LENGTH = 241 COMBINED P-VALUE = 3.95e-34 E-VALUE = 1.3e-32
DIAGRAM: 1-[1]-127-[2]-63
[1]
8.9e-19
GKVVLITGCSSGIGKATAKHL
+++++++++++++++++++++
1 MQKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATATAVAAEINQAGGRAVAIKVDVSRRDQVFAAVEQARK
[
1
S
+
76 ALGGFNVIVNNAGIAPSTPIESITEEIVDRVYNINVKGVIWGMQAAVEAFKKEGHGGKIVNACSQAGHVGNPELA
2]
.1e-22
VYCASKFAVRMLTRSMAMEYAPHGIRVN
++++++++++++++++++++++ +++++
151 VYSSSKFAVRGLTQTAARDLAPLGITVNGFCPGIVKTPMWAEIDRQCRKRRANRWATARLNLPNASPLAACRSLK
YRTP_BACSU
HYPOTHETICAL 25.3 KD PROTEIN IN RTP 5'REGION (ORF238)
LENGTH = 238 COMBINED P-VALUE = 4.17e-34 E-VALUE = 1.4e-32
DIAGRAM: 5-[1]-126-[2]-57
[1]
2.8e-17
GKVVLITGCSSGIGKATAKHL
+++++++++++++++++++++
1 MQSLQHKTALITGGGRGIGRATALALAKEGVNIGLIGRTSANVEKVAEEVKALGVKAAFAAADVKDADQVNQAVA
[2]
4.0e-24
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
++++++++++ ++++++++++++++++++
151 VTSAYSASKFAVLGLTESLMQEVRKHNIRVSALTPSTVASDMSIELNLTDGNPEKVMQPEDLAEYMVAQLKLDPR
FIXR_BRAJA
FIXR PROTEIN
LENGTH = 278 COMBINED P-VALUE = 1.05e-29 E-VALUE = 3.5e-28
DIAGRAM: 35-[1]-130-[2]-63
[1]
8.4e-16
GKVVLITGCSSGIGKATAKHL
++++ +++++++++++++ +
1 MGLDLPNDNLIRGPLPEAHLDRLVDAVNARVDRGEPKVMLLTGASRGIGHATAKLFSEAGWRIISCARQPFDGER
[2]
2.7e-21
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++ +++++ ++++++++++++++++++
151 APILLAQGLFDELRAASGSIVNVTSIAGSRVHPFAGSAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTD
AP27_MOUSE
ADIPOCYTE P27 PROTEIN (AP27)
LENGTH = 244 COMBINED P-VALUE = 3.19e-28 E-VALUE = 1.1e-26
DIAGRAM: 6-[1]-119-[2]-69
[1]
9.5e-15
GKVVLITGCSSGIGKATAKHL
+ +++++++++++++ +++++
1 MKLNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIG
[2]
1.0e
SVYC
++
76 PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYS
-20
ASKFAVRMLTRSMAMEYAPHGIRVN
++++++++++++++++++++ ++++
151 STKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSD
HDHA_ECOLI
7-ALPHA-HYDROXYSTEROID DEHYDROGENASE (EC 1.1.1.159) (HSDH)
LENGTH = 255 COMBINED P-VALUE = 4.97e-28 E-VALUE = 1.6e-26
DIAGRAM: 10-[1]-125-[2]-70
[1]
1.9e-16
GKVVLITGCSSGIGKATAKHL
++++++++++ ++++++++++
1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQEL
[2]
7.3e-19
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++ +++++ +++++ +++++++++++++
151 NKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIA
DHGB_BACME
GLUCOSE 1-DEHYDROGENASE B (EC 1.1.1.47)
LENGTH = 262 COMBINED P-VALUE = 1.44e-27 E-VALUE = 4.8e-26
DIAGRAM: 6-[1]-130-[2]-76
[1]
3.4e-15
GKVVLITGCSSGIGKATAKHL
++++++++++ ++++++++++
1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEEIKKVGGEAIAVKGDVTVESDVIN
[2]
1.1e-19
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
++ +++++++ +++++++++++++++++
151 KIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEE
HDE_CANTR
HYDRATASE-DEHYDROGENASE-EPIMERASE (HDE)
LENGTH = 906 COMBINED P-VALUE = 7.01e-27 E-VALUE = 2.3e-25
DIAGRAM: 7-[1]-132-[2]-132-[1]-122-[2]-413
[1]
1.9e-13
GKVVLITGCSSGIGKATAKHL
+++++++++++++++ +++++
1 MSPVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNV
[2]
9.7e-14
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++ +++ ++ ++ ++++++ ++++++ +
151 PAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPLARSRMTESILPPPMLEKLGPEKVAPLVLYLS
[1]
3.2e-17
GKVVLITGCSSGIGKATAKHL
++++++++++ ++++++++++
301 TNEARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQ
[2]
4.3e-18
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
++++++++++ +++++++ + ++ +++++
451 NITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHAETAMTLTIFREQDKNLYHADQVAPLL
DHII_HUMAN
CORTICOSTEROID 11-BETA-DEHYDROGENASE (EC 1.1.1.146) (11-DH) (11-BETA- HYDROXYSTEROID DEHYDROGENASE) (11-BETA-HSD)
LENGTH = 292 COMBINED P-VALUE = 7.06e-27 E-VALUE = 2.3e-25
DIAGRAM: 33-[1]-126-[2]-83
[1]
1.1e-17
GKVVLITGCSSGIGKATAKHL
+++++++++++++++++++++
1 MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV
[2]
1.4e-16
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++++++++++++ ++ +++++ ++++++
151 TVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMK
NODG_RHIME
NODULATION PROTEIN G (HOST-SPECIFICITY OF NODULATION PROTEIN C)
LENGTH = 245 COMBINED P-VALUE = 8.16e-27 E-VALUE = 2.7e-25
DIAGRAM: 5-[1]-123-[2]-67
[1]
7.3e-13
GKVVLITGCSSGIGKATAKHL
+ +++++++++ ++ ++++ +
1 MFELTGRKALVTGASGAIGGAIARVLHAQGAIVGLHGTQIEKLETLATELGDRVKLFPANLANRDEVKALGQRAE
[
3
S
+
76 ADLEGVDILVNNAGITKDGLFLHMADPDWDIVLEVNLTAMFRLTREITQQMIRRRNGRIINVTSVAGAIGNPGQT
2]
.5e-21
VYCASKFAVRMLTRSMAMEYAPHGIRVN
++++++++++++++++++++++ +++++
151 NYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNHKQKEKIMVAIPIHRMGTGTEVASAVAYLAS
YINL_LISMO
HYPOTHETICAL 26.8 KD PROTEIN IN INLA 5'REGION (ORFA)
LENGTH = 248 COMBINED P-VALUE = 8.79e-27 E-VALUE = 2.9e-25
DIAGRAM: 4-[1]-126-[2]-68
[1]
2.4e-18
GKVVLITGCSSGIGKATAKHL
+++++++++++++++++++ +
1 MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQIIKANSGEAIFAKTDVTKREDNKKLVEL
[2]
1.1e-15
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++++++++++ +++ ++++ ++++ +++
151 GAVYGATKWAVRDLMEVLRMESAQEGTNIRTATIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVA
DHB2_HUMAN
no comment
LENGTH = 387 COMBINED P-VALUE = 9.29e-27 E-VALUE = 3.1e-25
DIAGRAM: 81-[1]-127-[2]-129
[1]
5.4e-16
GKVVLITGCSSGIGKATAKHL
+++++++++++++++++++++
76 ELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENGPGAEELRRTCSPRLSVLQMDITKPVQIKDAYS
[2]
2.0e-18
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++++++++++++++ ++++++++++++
226 MERLASYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLPAEVQEDYGQDYI
RIDH_KLEAE
RIBITOL 2-DEHYDROGENASE (EC 1.1.1.56) (RDH)
LENGTH = 249 COMBINED P-VALUE = 2.65e-26 E-VALUE = 8.7e-25
DIAGRAM: 13-[1]-123-[2]-63
[1]
4.3e-16
GKVVLITGCSSGIGKATAKHL
++++ ++++++++++++++++
1 MKHSVSSMNTSLSGKVAAITGAASGIGLECARTLLGAGAKVVLIDREGEKLNKLVAELGENAFALQVDLMQADQV
[2]
1.9e-17
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
++++++++++++++++ +++++++++++
151 VVPVIWEPVYTASKFAVQAFVHTTRRQVAQYGVRVGAVLPGPVVTALLDDWPKAKMDEALANGSLMQPIEVAESV
DHMA_FLAS1
N-ACYLMANNOSAMINE 1-DEHYDROGENASE (EC 1.1.1.233) (NAM-DH)
LENGTH = 270 COMBINED P-VALUE = 4.04e-26 E-VALUE = 1.3e-24
DIAGRAM: 13-[1]-128-[2]-79
[1]
4.7e-15
GKVVLITGCSSGIGKATAKHL
++++++++++++++++++++
1 TTAGVSRRPGRLAGKAAIVTGAAGGIGRATVEAYLREGASVVAMDLAPRLAATRYEEPGAIPIACDLADRAAIDA
[2]
2.2e-18
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++ ++++++ +++++++++++++++ ++
151 GSVNSFMAEPEAAAYVAAKGGVAMLTRAMAVDLARHGILVNMIAPGPVDVTGNNTGYSEPRLAEQVLDEVALGRP
FVT1_HUMAN
no comment
LENGTH = 332 COMBINED P-VALUE = 6.24e-26 E-VALUE = 2.1e-24
DIAGRAM: 31-[1]-131-[2]-120
[1]
5.2e-15
GKVVLITGCSSGIGKATAKHL
+ +++++++++++++++++++
1 MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKE
[2]
2.0e-18
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++++++++++++ +++++++++++++++
151 YPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFA
ENTA_ECOLI
2,3-DIHYDRO-2,3-DIHYDROXYBENZOATE DEHYDROGENASE (EC 1.3.1.28)
LENGTH = 248 COMBINED P-VALUE = 2.02e-25 E-VALUE = 6.7e-24
DIAGRAM: 4-[1]-116-[2]-78
[1]
3.6e-17
GKVVLITGCSSGIGKATAKHL
+++++++++++++++++++++
1 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDA
[2]
1.8e-15
SVYCASKFA
+++++++++
76 LVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAA
VRMLTRSMAMEYAPHGIRVN
++++ + ++++ ++++++
151 LKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFL
2BHD_STREX
20-BETA-HYDROXYSTEROID DEHYDROGENASE (EC 1.1.1.53)
LENGTH = 255 COMBINED P-VALUE = 4.68e-25 E-VALUE = 1.5e-23
DIAGRAM: 5_[1]_3_[1]_99_[2]_77
[1] [1]
4.4e-13 4.5e-05
GKVVLITGCSSGIGKATAKHL GKVVLITGCSSGIGKATAKHL
++++++++++++++ + +++ + +++ + ++++++
1 MNDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAR
[
3
S
+
76 EEFGSVDGLVNNAGISTGMFLETESVERFRKVVDINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTS
2]
.2e-19
VYCASKFAVRMLTRSMAMEYAPHGIRVN
++++++++++++++ +++++++ +++++
151 SYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLL
BDH_HUMAN
D-BETA-HYDROXYBUTYRATE DEHYDROGENASE PRECURSOR (EC 1.1.1.30) (BDH) (3-HYDROXYBUTYRATE DEHYDROGENASE) (FRAGMENT)
LENGTH = 343 COMBINED P-VALUE = 7.26e-25 E-VALUE = 2.4e-23
DIAGRAM: 54-[1]-130-[2]-109
[1]
1.8e-15
GKVVLITGCSSGIGKATAKHL
++++++++++++ ++++++++
1 GLRPPPPGRFSRLPGKTLSACDRENGARRPLLLGSTSFIPIGRRTYASAAEPVGSKAVLVTGCDSGFGFSLAKHL
[2]
6.5e-17
SVYCASKFAVRMLTRSMAME
++++ +++++++++ +++++
151 GEVEFTSLETYKQVAEVNLWGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYE
YAPHGIRVN
+++ +++++
226 MYPLGVKVSVVEPGNFIAATSLYNPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSSGSTDTSPVID
HMTR_LEIMA
no comment
LENGTH = 287 COMBINED P-VALUE = 1.33e-24 E-VALUE = 4.4e-23
DIAGRAM: 5-[1]-164-[2]-68
[1]
1.4e-12
GKVVLITGCSSGIGKATAKHL
++++++++++ +++++++ +
1 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVS
[2]
2.3e-19
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+ +++++++++++++++++++++ +++++
151 PYFLIKAFAHRSRHPSQASRTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL
DHES_HUMAN
ESTRADIOL 17 BETA-DEHYDROGENASE (EC 1.1.1.62) (20 ALPHA-HYDROXYSTEROID DEHYDROGENASE) (E2DH) (17-BETA-HSD) (PLACENTAL 17-BETA-HYDROXYSTEROID DEHYDROGENASE)
LENGTH = 327 COMBINED P-VALUE = 5.97e-24 E-VALUE = 2e-22
DIAGRAM: 1-[1]-130-[2]-146
[1]
1.3e-14
GKVVLITGCSSGIGKATAKHL
++++++++++++++++ ++
1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAA
[2]
8.7e-17
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
++++++++++++++++++ + + +++ +
151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQV
3BHD_COMTE
3-BETA-HYDROXYSTEROID DEHYDROGENASE (EC 1.1.1.51)
LENGTH = 253 COMBINED P-VALUE = 1.62e-23 E-VALUE = 5.3e-22
DIAGRAM: 5_[1]_122_[2]_76
[1]
2.5e-15
GKVVLITGCSSGIGKATAKHL
++++++++++++++++ ++ +
1 TNRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQ
[2
2.
SV
+
76 RRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAG
]
1e-15
YCASKFAVRMLTRSMAMEYAPHGIRVN
+++++++++++++++++ +++++ ++
151 YSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQL
BA72_EUBSP
7-ALPHA-HYDROXYSTEROID DEHYDROGENASE (EC 1.1.1.159) (BILE ACID 7-DEHYDROXYLASE) (BILE ACID-INDUCIBLE PROTEIN)
LENGTH = 249 COMBINED P-VALUE = 1.65e-23 E-VALUE = 5.5e-22
DIAGRAM: 5-[1]-128-[2]-66
[1]
1.0e-14
GKVVLITGCSSGIGKATAKHL
+++ +++++ ++++++ ++ +
1 MNLVQDKVTIITGGTRGIGFAAAKIFIDNGAKVSIFGETQEEVDTALAQLKELYPEEEVLGFAPDLTSRDAVMAA
[2]
5.4e-16
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+ +++++++++++ + +++ ++++++
151 SLSGVGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDMTNGNPPEIMEGYLKALPMKRMLEPEEIANVY
GUTD_ECOLI
SORBITOL-6-PHOSPHATE 2-DEHYDROGENASE (EC 1.1.1.140) (GLUCITOL-6- PHOSPHATE DEHYDROGENASE) (KETOSEPHOSPHATE REDUCTASE)
LENGTH = 259 COMBINED P-VALUE = 8.98e-23 E-VALUE = 3e-21
DIAGRAM: 1-[1]-129-[2]-79
[1]
3.4e-10
GKVVLITGCSSGIGKATAKHL
++++++ ++++ ++ +++ +
1 MNQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQEINAEYGESMAYGFGADATSEQSCLALSRGV
[2]
8.7e-20
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+ +++++++ +++++++++++++++++++
151 NSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDKVPLKRGC
DHB3_HUMAN
no comment
LENGTH = 310 COMBINED P-VALUE = 1.18e-22 E-VALUE = 3.9e-21
DIAGRAM: 47-[1]-127-[2]-86
[1]
7.8e-15
GKVVLITGCSSGIGKATAKHL
++++++++++ +++++++ ++
1 MGDVLEQFFILTGLLVCLACLAKCVRFSRCVLLNYYKVLPKSFLRSMGQWAVITGAGDGIGKAYSFELAKRGLNV
[2]
3.4e-15
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
++++++++++++++++++ +++ + + ++
151 QSLIHCNITSVVKMTQLILKHMESRQKGLILNISSGIALFPWPLYSMYSASKAFVCAFSKALQEEYKAKEVIIQV
BPHB_PSEPS
BIPHENYL-CIS-DIOL DEHYDROGENASE (EC 1.3.1.-)
LENGTH = 275 COMBINED P-VALUE = 1.63e-20 E-VALUE = 5.4e-19
DIAGRAM: 4-[1]-125-[2]-96
[1]
2.1e-14
GKVVLITGCSSGIGKATAKHL
+ ++++++++++++++++ ++
1 MKLKGEAVLITGGASGLGRALVDRFVAEAKVAVLDKSAERLAELETDLGDNVLGIVGDVRSLEDQKQAASRCVAR
[2]
2.5e-13
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+ ++++++++++++++++++++++ +
151 PLYTAAKQAIVGLVRELAFELAPYVRVNGVGPGGMNSDMRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEE
LIGD_PSEPA
C ALPHA-DEHYDROGENASE (EC -.-.-.-)
LENGTH = 305 COMBINED P-VALUE = 2.04e-20 E-VALUE = 6.7e-19
DIAGRAM: 5-[1]-128-[2]-122
[1]
1.4e-12
GKVVLITGCSSGIGKATAKHL
++++ +++++++ ++ +++ +
1 MKDFQDQVAFITGGASGAGFGQAKVFGQAGAKIVVADVRAEAVEKAVAELEGLGITAHGIVLDIMDREAYARAAD
[2]
3.7e-15
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
++++++++ +++++ +++ + ++++ ++
151 SALAGPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANIKSNIAEASRLRPAKYGTSGYVENEESIASLHSIHQ
RFBB_NEIGO
no comment
LENGTH = 346 COMBINED P-VALUE = 2.09e-20 E-VALUE = 6.9e-19
DIAGRAM: 5-[1]-136-[2]-155
[1]
1.2e-12
GKVVLITGCSSGIGKATAKHL
+++++++++++ ++ + +++
1 MQTEGKKNILVTGGAGFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVF
[2]
3.4e-15
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++++++++ +++++++++ ++ ++ +
151 DLFTETTPYAPSSPYSASKAAADHLVRAWQRTYRLPSIVSNCSNNYGPRQFPEKLIPLMILNALSGKPLPVYGDG
DHCA_HUMAN
no comment
LENGTH = 276 COMBINED P-VALUE = 4.62e-19 E-VALUE = 1.5e-17
DIAGRAM: 3-[1]-166-[2]-57
[1]
3.4e-15
GKVVLITGCSSGIGKATAKHL
++++++++++++++++++++
1 SSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDF
[2]
4.5e-11
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
++++ ++ +++ +++ +++ +++++
151 PELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNAC
ADH_DROME
ALCOHOL DEHYDROGENASE (EC 1.1.1.1)
LENGTH = 255 COMBINED P-VALUE = 4.42e-16 E-VALUE = 1.5e-14
DIAGRAM: 5-[1]-123-[2]-77
[1]
1.8e-10
GKVVLITGCSSGIGKATAKHL
+++++ + +++++ +++++
1 SFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVTFYPYDVTVPIAETTKL
[
1
S
+
76 LKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAILDFWDKRKGGPGGIICNIGSVTGFNAIYQVP
2]
.1e-12
VYCASKFAVRMLTRSMAMEYAPHGIRVN
+++ ++++++++++++++ ++++ +
151 VYSGTKAAVVNFTSSLAKLAPITGVTAYTVNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKA
FABI_ECOLI
no comment
LENGTH = 262 COMBINED P-VALUE = 1.59e-15 E-VALUE = 5.3e-14
DIAGRAM: 5-[1]-130-[2]-77
[1]
6.4e-10
GKVVLITGCSSGIGKATAKHL
++++++++ ++ + ++ ++
1 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMF
[2]
1.1e-12
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++ +++++++ +++++ +++++++++
151 RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDV
YURA_MYXXA
no comment
LENGTH = 258 COMBINED P-VALUE = 2.17e-14 E-VALUE = 7.1e-13
DIAGRAM: 157-[2]-72
[2]
8.3e-18
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+ +++++++++ ++++++++++ ++++++
151 GFRGLPATRYSASKAFLSTFMESLRVDLRGTGVRVTCIYPGFVKSELTATNNFPMPFLMETHDAVELMGKGIVRG
PCR_PEA
no comment
LENGTH = 399 COMBINED P-VALUE = 2.49e-12 E-VALUE = 8.2e-11
DIAGRAM: 85-[1]-293
[1]
2.8e-15
GKVVLITGCSSGIGKATAKHL
+ +++++++++++++++++++
76 SSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAARAAKSAGLAKENYTIMHLDLASLDS
MAS1_AGRRA
no comment
LENGTH = 476 COMBINED P-VALUE = 8.12e-11 E-VALUE = 2.7e-09
DIAGRAM: 244-[1]-124-[2]-58
[1]
6.2e-13
GKVVLITGCSSGIGKATAKHL
++++++ ++++++++++++++
226 GRVLHFRRGFSHWTVEIHQSPVILVSGSNRGVGKAIAEDLIAHGYRLSLGARKVKDLEVAFGPQDEWLHYARFDA
[2]
2.3e-05
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+ +++ ++ +++++ ++ +
376 NINSMSGQRVLNPLVGYNMTKHALGGLTKTTQHVGWDRRCAAIDICLGFVATDMSAWTDLIASKDMIQPEDIAKL
CSGA_MYXXA
no comment
LENGTH = 166 COMBINED P-VALUE = 1.37e-09 E-VALUE = 4.5e-08
DIAGRAM: 85-[2]-52
[2]
5.8e-13
SVYCASKFAVRMLTRSMAMEYAPHGIRVN
+++ ++++++ + ++++ ++++++ +
76 SLAANTDGGAYAYRMSKAALNMAVRSMSTDLRPEGFVTVLLHPGWVQTDMGGPDATLPAPDSVRGMLRVIDGLNP
Debugging Information
CPU: tlb-sayonara.imb.uq.edu.au
Time 0.026995 secs.
mast ../../../tests/meme/meme.adh.zoops ../../../tests/adh.s -stdout
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Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information