transfac2meme

Usage: transfac2meme [options] <matrix file>

Description:

Extract motifs from a transfac 'matrix.dat' file and print them in MEME Version 3.0 format.

Counts are converted to frequencies using pseudo-counts determined by the backgoround frequencies and the total pseudocounts (see -bg and -pseudo, above). The log-odds matrix uses the background frequencies in the denominator and is log base 2.

N.B. Dollar signs in TRANSFAC IDs are converted to underscores.

Input:

A file in TRANSFAC matrix format

Options:

Output

Writes MEME format to standard output.