Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to
discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
[postscript][pdf]
Citing MAST
Timothy L. Bailey and Michael Gribskov, "Combining evidence using p-values: application to sequence homology searches",
Bioinformatics, Vol. 14, pp. 48-54, 1998.
[postscript][pdf]
Citing GLAM2 and GLAM2SCAN
MC Frith, NFW Saunders, B Kobe, TL Bailey,
"Discovering sequence motifs with arbitrary
insertions and deletions",
PLoS Computational Biology, 4(5):e1000071, 2008.
[full text]
Citing TOMTOM
Shobhit Gupta, JA Stamatoyannopolous,
Timothy Bailey and William Stafford Noble,
"Quantifying similarity between motifs",
Genome Biology, 8(2):R24, 2007.
[full text]
Citing GOMO
Mikael Boden and Timothy L. Bailey
"Associating transcription factor binding site motifs with target Go terms and target genes",
Nucl. Acids Res, 36, 4108-4117, 2008.
[full text]